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Species belonging to selected taxon:

Raphanus sativus, Raphanus sativus var. oleiformis



ABOUT THIS RECORD

ID: MNEST002403
species: Raphanus sativus
miRNA family: MIR171
source: miRNEST

Taxonomy by NCBI:
Raphanus sativus Raphanus Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TGATTGAGCCGCGCCAATATC

miRNA*
TATTGGCCTGGTTCACTCAGA

mismatches: 2
bulges: 0

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pre-miRNA
TAGCACGAAAGAGTCCTCTTTGATATTGGCCTGGTTCACTCAGATATTCCAGATAACGCACGCACCACATTCTTTCTCTTAGTTATCTGATTGAGCCGCG
CCAATATC
TCAGTGCTCTCTCGTCTCTC


dot-bracket secondary structure
....((((.(((((...((..(((((((((.(((((((.(((((((....(((.((.................)).)))....))))))).))))))).)
))))))))
..)).))))).)))).....



SIMILARITIES
miRBase bra-MIR171e: 1e-41

PMRD bra-miR171e: 1e-41

microPC miR171: 0.00000003
UniProt no hits

RFAM MIR171_1: 2e-34
most similar mature miRNAs

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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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